- Overview of Genome Basics
- How to find where genes are located on the genome.
- Finding closest relatives
- Compare your genome to those of closest relatives
- How are the locations of genes predicted
- How do you add and delete genes
- How do you find the correct start site for a protein coding gene
- Gaps
- Ribosomal binding site metrics
- Coding Capacity
- ORF (Open Reading Frame)
- Weighing all of the Evidence
- How do you find the correct start and stop site for a tRNA or a tmRNA gene
- tRNA Gene
- tmRNA Gene
- How do you annotate translational frameshifts
- Tail assembly chaperone protein genes
- How do you find the function of a protein coding gene?
- PhagesDB
- HHPred
- NCBI BLAST
- Conserved Domain Database
- Transmembrane predictions
- How do you annotate or quality check the function & synteny of a protein coding gene
- Function
- Synteny
- Notes, final review, and quality checking
PECAAN Video Tutorials
Overview and Genome Basics
Finding closest relatives
Compare genome to closest relatives
How the locations of genes are predicted
How to add and delete genes
SEA PHAGES annotation guide
Starterator, PhagesDB & NCBI BLAST
Gaps & Ribosomal Binding Sites
GM coding capacity, LORF & start sites
tRNA and tmRNA
Assigning a function